5J1T

TorsinAdeltaE-LULL1 complex, H. sapiens, bound to VHH-BS2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.148

Literature

Macromolecules
Sequence Display for 5J1T

Classification: HYDROLASE

Total Structure Weight: 73626.37

Macromolecule Entities
Molecule Chains Length Organism Details
Torsin-1A A 283 Homo sapiens EC#: 3.6.4 IUBMB
Mutation: E171Q, ΔE302
Gene Name(s): TOR1A Gene View DQ2 DYT1 TA TORA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Torsin-1A-interacting protein 2 B 239 Homo sapiens Gene Name(s): TOR1AIP2 Gene View IFRG15 LULL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
VHH domain BS-2 C 123 Vicugna pacos

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BTB
Query on BTB

A 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- PROPANE-1,3-DIOL
BIS-TRIS BUFFER (Synonym)
C8 H19 N O5
OWMVSZAMULFTJU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.148
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 75.43 α = 90.00
b = 88.44 β = 90.00
c = 105.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-29
  • Released Date: 2016-08-17
  • Deposition author(s): Demircioglu, F.E., Schwartz, T.U.

Revision History

  • Version 1_0: 2016-08-17

    Type: Initial release

  • Version 1_1: 2017-09-20

    Type: Author supporting evidence, Derived calculations