5J12
Structure of human TSLP:TSLPR in complex with mouse IL-7Ralpha
- PDB DOI: https://doi.org/10.2210/pdb5J12/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens, Mus musculus
- Expression System: Homo sapiens, Escherichia coli BL21(DE3)
- Mutation(s): Yes 
- Deposited: 2016-03-28 Released: 2017-04-05 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.55 Å
- R-Value Free: 0.225 
- R-Value Work: 0.214 
- R-Value Observed: 0.214 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Thymic stromal lymphopoietin | 163 | Homo sapiens | Mutation(s): 2  Gene Names: TSLP | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q969D9 (Homo sapiens) Explore Q969D9  Go to UniProtKB:  Q969D9 | |||||
PHAROS:  Q969D9 GTEx:  ENSG00000145777  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q969D9 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Interleukin-7 receptor subunit alpha | 223 | Mus musculus | Mutation(s): 0  Gene Names: Il7r | ||
UniProt | |||||
Find proteins for P16872 (Mus musculus) Explore P16872  Go to UniProtKB:  P16872 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16872 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytokine receptor-like factor 2 | 230 | Homo sapiens | Mutation(s): 0  Gene Names: CRLF2, CRL2, ILXR, TSLPR | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9HC73 (Homo sapiens) Explore Q9HC73  Go to UniProtKB:  Q9HC73 | |||||
PHAROS:  Q9HC73 GTEx:  ENSG00000205755  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9HC73 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | D [auth A], H [auth C], I [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
SO4 Query on SO4 | E [auth C], F [auth C], G [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.55 Å
- R-Value Free: 0.225 
- R-Value Work: 0.214 
- R-Value Observed: 0.214 
- Space Group: P 65 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 125.442 | α = 90 |
b = 125.442 | β = 90 |
c = 194.573 | γ = 120 |
Software Name | Purpose |
---|---|
BUSTER | refinement |
XDS | data reduction |
PHASER | phasing |
Coot | model building |
Entry History 
Deposition Data
- Released Date: 2017-04-05  Deposition Author(s): Verstraete, K., Savvides, S.N.
Revision History (Full details and data files)
- Version 1.0: 2017-04-05
Type: Initial release - Version 1.1: 2018-02-28
Changes: Source and taxonomy - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2024-01-10
Changes: Data collection, Database references, Refinement description, Structure summary