5IX7

Crystal structure of metallo-DNA nanowire with infinite one-dimensional silver array


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 5IX7

Classification: DNA

Total Structure Weight: 4427.67

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*AP*CP*TP*(CBR)P*GP*AP*CP*TP*CP*C)-3') A 12 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AG
Query on AG

A SILVER ION
Ag
FOIXSVOLVBLSDH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CBR
Query on CBR
A DNA LINKING C9 H13 Br N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.165
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 30.15 α = 90.00
b = 30.15 β = 90.00
c = 118.42 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-23
  • Released Date: 2017-07-05
  • Deposition author(s): Kondo, J., Tada, Y., Dairaku, T., Hattori, Y., Saneyoshi, H., Ono, A., Tanaka, Y.

Revision History

  • Version 1_0: 2017-07-05

    Type: Initial release

  • Version 1_1: 2017-10-11

    Type: Database references