5I0G

Cycloalternan-degrading enzyme from Trueperella pyogenes in complex with cycloalternan


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 5I0G

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 83123.11

Macromolecule Entities
Molecule Chains Length Organism Details
Glycoside hydrolase family 31 B 733 Trueperella pyogenes Mutation: D532A
Gene Name(s): CQ11_05330
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GLC
Query on GLC

B ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SIN
Query on SIN

B SUCCINIC ACID
C4 H6 O4
KDYFGRWQOYBRFD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.172
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 196.37 α = 90.00
b = 103.90 β = 90.32
c = 44.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-03
  • Released Date: 2016-12-14
  • Deposition author(s): Light, S.H., Minasov, G., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2016-12-14

    Type: Initial release

  • Version 1_1: 2017-01-25

    Type: Database references

  • Version 1_2: 2017-02-22

    Type: Database references