5I0F

Cycloalternan-degrading enzyme from Trueperella pyogenes in complex with covalent intermediate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.159

Literature

Macromolecules
Sequence Display for 5I0F

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 83519.83

Macromolecule Entities
Molecule Chains Length Organism Details
Glycoside hydrolase family 31 B 733 Trueperella pyogenes Gene Name(s): CQ11_05330
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BGC
Query on BGC

B BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

B ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

B TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.159
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 195.13 α = 90.00
b = 103.13 β = 92.14
c = 44.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-03
  • Released Date: 2016-12-14
  • Deposition author(s): Light, S.H., Minasov, G., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2016-12-14

    Type: Initial release

  • Version 1_1: 2017-01-25

    Type: Database references

  • Version 1_2: 2017-02-22

    Type: Database references