5I0D

Cycloalternan-forming enzyme from Listeria monocytogenes in complex with cycloalternan


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 5I0D

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 247191.89

Macromolecule Entities
Molecule Chains Length Organism Details
Lmo2446 protein A, B 1063 Listeria monocytogenes Gene Name(s): lmo2446
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GLC
Query on GLC

A, B ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.144
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 74.75 α = 90.00
b = 101.23 β = 101.02
c = 166.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-03
  • Released Date: 2016-12-14
  • Deposition author(s): Light, S.H., Minasov, G., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2016-12-14

    Type: Initial release

  • Version 1_1: 2017-01-25

    Type: Database references

  • Version 1_2: 2017-02-22

    Type: Database references