5HHI

Structure of human DNA polymerase beta Host-Guest complexed with CBZ-platinated N7-G


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 5HHI

Classification: TRANSFERASE LYASE / DNA

Total Structure Weight: 47520.79


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase beta A 329 Homo sapiens EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Gene Name(s): POLB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*AP*GP*GP*AP*GP*CP*AP*GP*G)-3') T 16 Synthetic construct
DNA (5'-D(P*CP*CP*TP*GP*CP*TP*CP*CP*TP*C)-3') P 10 Synthetic construct
DNA (5'-D(P*GP*TP*CP*GP*G)-3') D 5 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
61C
Query on 61C

P platinum(4+) chloride azanide [2-(9H-carbazol- 9-yl)ethyl]azanide (1:1:2:1)
C14 H17 Cl N4 Pt
YBILSKKWHHSPJW-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.222
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 54.37 α = 90.00
b = 80.12 β = 108.94
c = 54.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-01-11
  • Released Date: 2017-01-18
  • Deposition author(s): Lee, S., Koag, M.-C.

Revision History

  • Version 1_0: 2017-01-18

    Type: Initial release