5HAB

Crystal structure of mpy-RNase J (mutant H84A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 5HAB

Classification: HYDROLASE

Total Structure Weight: 108293.48


Macromolecule Entities
Molecule Chains Length Organism Details
Ribonuclease J A, B 470 Methanolobus psychrophilus EC#: 3.1 IUBMB
Fragment: UNP residues 2-448
Mutation: H84A
Gene Name(s): rnj Mpsy_0886
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*AP*AP*AP*AP*A)-3') C, D 5 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.206
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 169.68 α = 90.00
b = 169.68 β = 90.00
c = 167.32 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-12-30
  • Released Date: 2017-01-04
  • Deposition author(s): Li, D.F., Feng, N.

Revision History

  • Version 1_0: 2017-01-04

    Type: Initial release