5H3U

Sm RNA bound to GEMIN5-WD

Structural Biology Knowledgebase: 5H3U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 5H3U

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 167806.38


Macromolecule Entities
Molecule Chains Length Organism Details
Gem-associated protein 5 A, B 740 Homo sapiens Fragment: UNP residues 1-740
Gene Name(s): GEMIN5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*AP*UP*UP*UP*UP*UP*GP*AP*C)-3') C 10 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.202
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 76.84 α = 90.00
b = 92.08 β = 99.99
c = 110.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-10-27
  • Released Date: 2016-12-28
  • Deposition author(s): Bharath, S.R., Tang, X., Song, H.

Revision History

No revisions since initial release