5GZB

Crystal Structure of Transcription Factor TEAD4 in Complex with M-CAT DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 5GZB

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 20415.83


Macromolecule Entities
Molecule Chains Length Organism Details
Transcriptional enhancer factor TEF-3 A 107 Homo sapiens Fragment: UNP residues 36-139
Gene Name(s): TEAD4 Gene View RTEF1 TCF13L1 TEF3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*TP*GP*CP*AP*TP*TP*CP*CP*TP*CP*TP*C)-3') B 13 Homo sapiens
DNA (5'-D(*GP*AP*GP*AP*GP*GP*AP*AP*TP*GP*CP*AP*A)-3') C 13 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.229
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 118.60 α = 90.00
b = 118.60 β = 90.00
c = 110.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-09-28
  • Released Date: 2017-04-19
  • Deposition author(s): He, F., Shi, Z.B., Zhou, Z.C.

Revision History

  • 2017-08-09
    Type: Database references