5GXQ

The crystal structure of the nucleosome containing H3.6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 5GXQ

Classification: STRUCTURAL PROTEIN / DNA

Total Structure Weight: 201871.95


Macromolecule Entities
Molecule Chains Length Organism Details
Histone H3.6 A, E 139 Homo sapiens
Histone H4 B, F 106 Homo sapiens Gene Name(s): HIST1H4A Gene View H4/A H4FA HIST1H4B Gene View H4/I H4FI HIST1H4C Gene View H4/G H4FG HIST1H4D Gene View H4/B H4FB HIST1H4E Gene View H4/J H4FJ HIST1H4F Gene View H4/C H4FC HIST1H4H Gene View H4/H H4FH HIST1H4I Gene View H4/M H4FM HIST1H4J Gene View H4/E H4FE HIST1H4K Gene View H4/D H4FD HIST1H4L Gene View H4/K H4FK HIST2H4A Gene View H4/N H4F2 H4FN HIST2H4 HIST2H4B Gene View H4/O H4FO HIST4H4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2A type 1-B/E C, G 133 Homo sapiens Gene Name(s): HIST1H2AB Gene View H2AFM HIST1H2AE Gene View H2AFA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2B type 1-J D, H 129 Homo sapiens Gene Name(s): HIST1H2BJ Gene View H2BFR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (146-MER) I, J 146 Homo sapiens


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.219
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 106.03 α = 90.00
b = 109.76 β = 90.00
c = 181.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-09-19
  • Released Date: 2017-04-19
  • Deposition author(s): Taguchi, H., Xie, Y., Horikoshi, N., Kurumizaka, H.

Revision History

  • 2017-05-10
    Type: Database references