5GQZ

Crystal structure of branching enzyme Y500A mutant from Cyanothece sp. ATCC 51142


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.179
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 5GQZ

Classification: TRANSFERASE

Total Structure Weight: 93520.39

Macromolecule Entities
Molecule Chains Length Organism Details
1,4-alpha-glucan branching enzyme GlgB A 793 Cyanothece sp. atcc 51142 EC#: 2.4.1.18 IUBMB
Mutation: Y500A
Gene Name(s): glgB glgB1 cce_2248
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.179
  • R-Value Work: 0.158
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 133.93 α = 90.00
b = 133.93 β = 90.00
c = 184.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-08
  • Released Date: 2017-08-16
  • Deposition author(s): Suzuki, R., Suzuki, E.

Revision History

  • Version 1_0: 2017-08-16

    Type: Initial release