5GNJ

Structure of a transcription factor and DNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 5GNJ

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 120215.62


Macromolecule Entities
Molecule Chains Length Organism Details
Transcription factor MYC2 A, B, E..., F, G, I, M, NA, B, E, F, G, I, M, N 89 Arabidopsis thaliana Fragment: UNP RESIDUES 446-525
Gene Name(s): MYC2 BHLH6 EN38 JAI1 JIN1 RAP1 RD22BP1 ZBF1 At1g32640 F6N18.4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*GP*GP*AP*AP*CP*AP*CP*GP*TP*GP*AP*CP*CP*C)-3') C, H, K, O 15 Synthetic construct
DNA (5'-D(*TP*GP*GP*GP*TP*CP*AP*CP*GP*TP*GP*TP*TP*CP*C)-3') D, J, L, P 15 Synthetic construct


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.206
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 77.10 α = 90.00
b = 79.70 β = 105.00
c = 102.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-21
  • Released Date: 2017-05-10
  • Deposition author(s): Lian, T., Xu, Y., Su, X.

Revision History

  • Version 1_0: 2017-05-10

    Type: Initial release