5GM1

Crystal structure of methyltransferase TleD complexed with SAH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 5GM1

Classification: TRANSFERASE

Total Structure Weight: 598119.63

Macromolecule Entities
Molecule Chains Length Organism Details
O-methylransferase A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, P, Q, RA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R 297 Streptomyces blastmyceticus Gene Name(s): tleD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.207
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 259.62 α = 90.00
b = 152.90 β = 93.33
c = 154.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-12
  • Released Date: 2016-09-28
  • Deposition author(s): Yu, F., Li, M.J., Xu, C.Y., Zhou, H., Sun, B., Wang, Z.J., Xu, Q., Xie, M.Y., Zuo, G., Huang, P., Wang, Q.S., He, J.H.

Revision History

  • 2016-12-07
    Type: Citation | Details: Citation