5GLI

Human endothelin receptor type-B in the ligand-free form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.247

Literature

Macromolecules
Sequence Display for 5GLI

Classification: SIGNALING PROTEIN

Total Structure Weight: 53559.93

Macromolecule Entities
Molecule Chains Length Organism Details
Endothelin Receptor Subtype-B A 464 Homo sapiens EC#: 3.2.1.17 IUBMB
Gene Name(s): E EDNRB Gene View ETRB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: endothelin ETB receptor with bound endothelin-1


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OLC
Query on OLC

A (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLA
Query on OLA

A OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.247
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 73.98 α = 90.00
b = 147.54 β = 90.00
c = 107.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-11
  • Released Date: 2016-09-07
  • Deposition author(s): Shihoya, W., Nishizawa, T., Okuta, A., Tani, K., Fujiyoshi, Y., Dohmae, N., Nureki, O., Doi, T.

Revision History

  • Version 1_0: 2016-09-07

    Type: Initial release

  • Version 1_1: 2016-09-21

    Type: Database references, Structure summary

  • Version 1_2: 2016-09-28

    Type: Database references