5G5T

Structure of the Argonaute protein from Methanocaldcoccus janaschii in complex with guide DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 5G5T

Classification: HYDROLASE / DNA

Total Structure Weight: 91991.97


Macromolecule Entities
Molecule Chains Length Organism Details
ARGONAUTE A 713 Methanocaldococcus jannaschii Gene Name(s): MJ1321
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
GUIDE DNA D 21 Methanocaldococcus jannaschii

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.229
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 117.95 α = 90.00
b = 117.95 β = 90.00
c = 134.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-03
  • Released Date: 2017-02-08
  • Deposition author(s): Schneider, S., Oellig, C.A., Keegan, R., Grohmann, D., Zander, A., Willkomm, S.

Revision History

  • Version 1_0: 2017-02-08

    Type: Initial release

  • Version 1_1: 2017-03-08

    Type: Database references

  • Version 1_2: 2017-03-29

    Type: Database references