5F5Y

WT Drosophila Melanogaster Cycle PAS-B with Bound Ethylene Glycol

PDB DOI: https://doi.org/10.2210/pdb5F5Y/pdb

Classification: CIRCADIAN CLOCK PROTEIN
Organism(s): Drosophila melanogaster
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-12-04 Released: 2016-12-07
Deposition Author(s): Manahan, C.C., Crane, B.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.245
R-Value Work: 0.198
R-Value Observed: 0.202

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

WT Drosophila Melanogaster Cycle PAS-B with Bound Ethylene Glycol

Manahan, C.C., Crane, B.R.

To be published.

Macromolecule Content

Total Structure Weight: 12.28 kDa
Atom Count: 903
Modelled Residue Count: 103
Deposited Residue Count: 103
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein cycle	A	103	Drosophila melanogaster	Mutation(s): 0 Gene Names: cyc, CG8727
UniProt
Find proteins for O61734 (Drosophila melanogaster) Explore O61734 Go to UniProtKB: O61734
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O61734
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.245
R-Value Work: 0.198
R-Value Observed: 0.202
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.71	α = 90
b = 44.518	β = 116.36
c = 38.437	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
Coot	model building

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2016-12-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-12-07
Type: Initial release
Version 1.1: 2017-11-22
Changes: Refinement description
Version 1.2: 2024-03-06
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.