5F0A

CRYSTAL STRUCTURE OF PVX_084705 WITH BOUND 1-tert-butyl-3-(3-chlorophenoxy)-1H-pyrazolo[3,4-d]pyrimidin-4-amine INHIBITOR

• PDB DOI: https://doi.org/10.2210/pdb5F0A/pdb
• Entry: 5F0A supersedes: 4WJC

• Classification: TRANSFERASE/TRANSFERASE INHIBITOR
• Organism(s): Plasmodium vivax Sal-1
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2015-11-27 Released: 2015-12-16 
• Deposition Author(s): Walker, J.R., Wernimont, A.K., He, H., Seitova, A., Loppnau, P., Sibley, L.D., Graslund, S., Hutchinson, A., Bountra, C., Weigelt, J., Edwards, A.M., Arrowsmith, C.H., Hui, R., El Bakkouri, M., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.242 
• R-Value Work: 0.209 
• R-Value Observed: 0.210 

Literature

CRYSTAL STRUCTURE OF PVX_084705 WITH BOUND INHIBITOR

Walker, J.R., Wernimont, A.K., He, H., Seitova, A., Loppnau, P., Sibley, L.D., Graslund, S., Hutchinson, A., Bountra, C., Weigelt, J., Edwards, A.M., Arrowsmith, C.H., Hui, R., El Bakkouri, M., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 97.04 kDa 
• Atom Count: 6,543 
• Modelled Residue Count: 811 
• Deposited Residue Count: 847 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
cGMP-dependent protein kinase, putative	A	847	Plasmodium vivax Sal-1	Mutation(s): 0  Gene Names: PVX_084705
UniProt
Find proteins for A5K0N4 (Plasmodium vivax (strain Salvador I)) Explore A5K0N4  Go to UniProtKB:  A5K0N4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
1FB	B [auth A]	1-tert-butyl-3-(3-chlorophenoxy)-1H-pyrazolo[3,4-d]pyrimidin-4-amine C15 H16 Cl N5 O FOCSESRERLFAOP-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.242 
• R-Value Work: 0.209 
• R-Value Observed: 0.210 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 192.172	α = 90
b = 117.452	β = 94.55
c = 67.699	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data reduction
HKL-3000	data scaling
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-12-16 
Deposition Author(s): Walker, J.R., Wernimont, A.K., He, H., Seitova, A., Loppnau, P., Sibley, L.D., Graslund, S., Hutchinson, A., Bountra, C., Weigelt, J., Edwards, A.M., Arrowsmith, C.H., Hui, R., El Bakkouri, M., Structural Genomics Consortium (SGC)
• This entry supersedes: 4WJC

Revision History  

• Version 1.0: 2015-12-16
  Type: Initial release
  
• Version 1.1: 2015-12-30
  Changes: Other
• Version 1.2: 2017-11-22
  Changes: Derived calculations, Refinement description
• Version 1.3: 2018-01-24
  Changes: Database references
• Version 1.4: 2023-09-27
  Changes: Data collection, Database references, Refinement description