5EY9

Structure of FadD32 from Mycobacterium marinum complexed to AMPC12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 5EY9

Classification: LIGASE

Total Structure Weight: 139843.11

Macromolecule Entities
Molecule Chains Length Organism Details
Long-chain-fatty-acid--AMP ligase FadD32 A, B 629 Mycobacterium marinum EC#: 6.2.1 IUBMB
Gene Name(s): fadD32 MMAR_5365
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5SV
Query on 5SV

A, B [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin- 9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl icosyl hydrogen phosphate
C30 H54 N5 O7 P
JFYKNVSLLXBVHG-BQOYKFDPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.185
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 71.79 α = 90.00
b = 100.15 β = 90.00
c = 212.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-11-24
  • Released Date: 2015-12-16
  • Deposition author(s): Guillet, V., Maveyraud, L., Mourey, L.

Revision History

  • 2016-04-20
    Type: Citation | Details: Citation
  • 2016-03-23
    Type: Citation | Details: Citation