5EH1
Crystal structure of the extracellular part of receptor 2 of human interferon gamma
- PDB DOI: https://doi.org/10.2210/pdb5EH1/pdb
- Classification: CYTOKINE
- Organism(s): Homo sapiens
- Expression System: Drosophila melanogaster
- Mutation(s): No 
- Deposited: 2015-10-27 Released: 2016-08-17 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.222 
- R-Value Work: 0.190 
- R-Value Observed: 0.191 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Interferon gamma receptor 2 | 231 | Homo sapiens | Mutation(s): 0  Gene Names: IFNGR2, IFNGT1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P38484 (Homo sapiens) Explore P38484  Go to UniProtKB:  P38484 | |||||
PHAROS:  P38484 GTEx:  ENSG00000159128  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P38484 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | C [auth A], D [auth A], E [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CYS Query on CYS | B [auth A] | CYSTEINE C3 H7 N O2 S XUJNEKJLAYXESH-REOHCLBHSA-N | |||
GOL Query on GOL | F [auth A], G [auth A], H [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.222 
- R-Value Work: 0.190 
- R-Value Observed: 0.191 
- Space Group: P 61 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 58.102 | α = 90 |
b = 58.102 | β = 90 |
c = 377.266 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
MxCuBE | data collection |
XDS | data reduction |
BALBES | phasing |
Entry History 
Deposition Data
- Released Date: 2016-08-17  Deposition Author(s): Kolenko, P., Mikulecky, P., Zahradnik, J., Dohnalek, J., Koval, T., Cerny, J., Necasova, I., Schneider, B.
Revision History (Full details and data files)
- Version 1.0: 2016-08-17
Type: Initial release - Version 1.1: 2016-09-14
Changes: Database references - Version 1.2: 2018-04-18
Changes: Data collection, Database references - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary