Macromolecules
Sequence Display for 5E3E

Classification: TOXIN

Total Structure Weight: 74689.23

Macromolecule Entities
Molecule Chains Length Organism Details
CdiI immunity protein A, C, E 104 Yersinia kristensenii Details: SEQUENCE IDENTICAL TO UNP REFERENCE C4TSS4 BUT WITH LONGER OPEN READING FRAME AT N-TERMINUS
Gene Name(s): ykris0001_13520
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Large exoprotein involved in heme utilization or adhesion B, D, F 114 Yersinia kristensenii Details: The cloned fragment starts from M0 preceding V1 (V3116 in the entire protein sequence numbering). The CdiA-CT/CdiI complex was treated with subtilisin, which removed N-terminal domain of the expressed CdiA-CT.
Gene Name(s): ykris0001_13530
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

B, E SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 48.89 α = 78.25
b = 57.15 β = 90.21
c = 64.30 γ = 79.11

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-10-02
  • Released Date: 2015-11-25
  • Deposition author(s): Michalska, K., Joachimiak, G., Jedrzejczak, R., Goulding, C.W., Joachimiak, A., Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes , Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2017-03-01
    Type: Polymer description | Details: Polymer description
  • 2017-02-22
    Type: Polymer description | Details: Polymer description
  • 2017-02-15
    Type: Sequence database correspondence | Details: Sequence database correspondence