5DQF

Horse Serum Albumin (ESA) in complex with Cetirizine

Structural Biology Knowledgebase: 5DQF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 5DQF

Classification: TRANSPORT PROTEIN

Total Structure Weight: 68077.17

Macromolecule Entities
Molecule Chains Length Organism Details
Serum albumin A 580 Equus caballus Mutation: R560A
Gene Name(s): ALB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CZE
Query on CZE

A (2-{4-[(S)-(4-chlorophenyl)(phenyl)methyl]piperazin- 1-yl}ethoxy)acetic acid
(S)-dextrocetirizine (Synonym)
C21 H25 Cl N2 O3
ZKLPARSLTMPFCP-NRFANRHFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LCR
Query on LCR

A (2-{4-[(R)-(4-chlorophenyl)(phenyl)methyl]piperazin- 1-yl}ethoxy)acetic acid
R-levocetirizine (Synonym)
C21 H25 Cl N2 O3
ZKLPARSLTMPFCP-OAQYLSRUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

A TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 94.23 α = 90.00
b = 94.23 β = 90.00
c = 141.89 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-14
  • Released Date: 2015-12-23
  • Deposition author(s): Handing, K.B., Shabalin, I.G., Majorek, K.A., Chruszcz, M., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

Revision History

  • 2016-03-09
    Type: Citation | Details: Citation
  • 2016-03-09
    Type: Data collection | Details: Data collection
  • 2016-02-24
    Type: Other | Details: doi for diffrraction image data added