5DKY

Crystal structure of glucosidase II alpha subunit (DNJ-bound from)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.155

Literature

Macromolecules
Sequence Display for 5DKY

Classification: HYDROLASE

Total Structure Weight: 108664.33

Macromolecule Entities
Molecule Chains Length Organism Details
Alpha glucosidase-like protein A 951 Chaetomium thermophilum Fragment: UNP RESIDUES 31-977
Gene Name(s): CTHT_0064960
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NOJ
Query on NOJ

A 1-DEOXYNOJIRIMYCIN
MORANOLINE (Synonym)
C6 H13 N O4
LXBIFEVIBLOUGU-JGWLITMVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.155
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 189.52 α = 90.00
b = 189.52 β = 90.00
c = 157.78 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-04
  • Released Date: 2016-01-27
  • Deposition author(s): Satoh, T., Toshimori, T., Yan, G., Yamaguchi, T., Kato, K.

Revision History

  • Version 1_0: 2016-01-27

    Type: Initial release

  • Version 1_1: 2016-02-17

    Type: Database references