5DKX

Crystal structure of glucosidase II alpha subunit (Tris-bound from)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.154

Literature

Macromolecules
Sequence Display for 5DKX

Classification: HYDROLASE

Total Structure Weight: 108694.20

Macromolecule Entities
Molecule Chains Length Organism Details
Alpha glucosidase-like protein A 951 Chaetomium thermophilum Fragment: UNP RESIDUES 31-977
Gene Name(s): CTHT_0064960
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.175
  • R-Value Work: 0.154
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 189.03 α = 90.00
b = 189.03 β = 90.00
c = 157.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-04
  • Released Date: 2016-01-27
  • Deposition author(s): Satoh, T., Toshimori, T., Yan, G., Yamaguchi, T., Kato, K.

Revision History

  • Version 1_0: 2016-01-27

    Type: Initial release

  • Version 1_1: 2016-02-17

    Type: Database references