5D67

Crystal structure of an EF-Hand calcium binding domain of CAP-Binding Protein Complex-Interacting Protein 1 (EFCAB6) from Homo sapiens at 2.00 A resolution

Structural Biology Knowledgebase: 5D67 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 5D67

Classification: METAL BINDING PROTEIN

Total Structure Weight: 48555.86

Macromolecule Entities
Molecule Chains Length Organism Details
EF-hand calcium-binding domain-containing protein 6 A, B, C, D 102 Homo sapiens Fragment: UNP residues 1160-1260
Mutation: D1066G
Gene Name(s): EFCAB6 Gene View DJBP KIAA1672
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 43.41 α = 90.00
b = 67.19 β = 100.05
c = 70.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-11
  • Released Date: 2015-09-02
  • Deposition author(s): Joint Center for Structural Genomics (JCSG), Partnership for Nuclear Receptor Signaling Code Biology, Partnership for Nuclear Receptor Signaling Code Biology (NHRS)

Revision History

No revisions since initial release