5D25

First bromodomain of BRD4 bound to inhibitor XD27


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 5D25

Classification: TRANSCRIPTION

Total Structure Weight: 15602.00

Macromolecule Entities
Molecule Chains Length Organism Details
Bromodomain-containing protein 4 A 126 Homo sapiens Fragment: UNP residues 43-168
Mutation: T43M
Gene Name(s): BRD4 Gene View HUNK1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
56M
Query on 56M

A 4-acetyl-N-[5-(diethylsulfamoyl)-2-hydroxyphenyl]- 3,5-dimethyl-1H-pyrrole-2-carboxamide
C19 H25 N3 O5 S
NKUTZMBFZKWADP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BU3
Query on BU3

A (R,R)-2,3-BUTANEDIOL
C4 H10 O2
OWBTYPJTUOEWEK-QWWZWVQMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.175
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 39.36 α = 90.00
b = 49.81 β = 90.00
c = 58.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-05
  • Released Date: 2016-01-20
  • Deposition author(s): Wohlwend, D., Huegle, M., Gerhardt, S.

Revision History

  • Version 1_0: 2016-01-20

    Type: Initial release

  • Version 1_1: 2016-03-09

    Type: Database references

  • Version 1_2: 2017-09-06

    Type: Author supporting evidence