5CAJ

Crystal structure of E. coli YaaA, a member of the DUF328/UPF0246 family


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.176
  • R-Value Work: 0.151

Literature

Macromolecules
Sequence Display for 5CAJ

Classification: UNKNOWN FUNCTION

Total Structure Weight: 64504.76

Macromolecule Entities
Molecule Chains Length Organism Details
UPF0246 protein YaaA A, B 278 Escherichia coli Gene Name(s): yaaA b0006 JW0005
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BEN
Query on BEN

A BENZAMIDINE
C7 H8 N2
PXXJHWLDUBFPOL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.176
  • R-Value Work: 0.151
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.66 α = 90.00
b = 77.06 β = 90.00
c = 184.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-29
  • Released Date: 2016-02-24
  • Deposition author(s): Prahlad, J., Lin, J., Wilson, M.A.

Revision History

No revisions since initial release