5CAI

Crystal structure of a putative lipoprotein from the DUF903 family (KPN_03160) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 2.30 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 5CAI

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 38320.29

Macromolecule Entities
Molecule Chains Length Organism Details
Putative lipoprotein from the DUF903 family A, B, C..., D, E, FA, B, C, D, E, F 56 Klebsiella pneumoniae Gene Name(s): ygdI KPN_03160
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B, C, D, E, F CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 108.21 α = 90.00
b = 108.21 β = 90.00
c = 142.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-29
  • Released Date: 2015-07-22
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

No revisions since initial release