5BW8

2.8 A crystal structure of a Get3-Get4-Get5 intermediate complex from S.cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 5BW8

Classification: Hydrolase / Transport

Total Structure Weight: 126180.77

Macromolecule Entities
Molecule Chains Length Organism Details
ATPase GET3 A, B 373 Saccharomyces cerevisiae EC#: 3.6 IUBMB
Gene Name(s): GET3 ARR4 YDL100C D2371
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Golgi to ER traffic protein 4 C 305 Saccharomyces cerevisiae Fragment: UNP residues 1-290
Mutation: K258A, K260A
Gene Name(s): GET4 Gene View YOR164C O3580
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin-like protein MDY2 D 54 Saccharomyces cerevisiae Fragment: UNP residues 1-54
Gene Name(s): MDY2 GET5 TMA24 YOL111C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Unknown Protein Z 13 Saccharomyces cerevisiae

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
Z L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.224
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 111.96 α = 90.00
b = 238.05 β = 90.00
c = 52.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-06
  • Released Date: 2015-10-14
  • Deposition author(s): Gristick, H.B., Chartron, J.W., Clemons, W.M.

Revision History

  • Version 1_0: 2015-10-14

    Type: Initial release

  • Version 1_1: 2015-10-21

    Type: Database references

  • Version 1_2: 2015-12-30

    Type: Database references