Download MendeleyRoom Temperature Structure of Pichia pastoris aquaporin at 1.3 A
Fischer, G., Aponte Santamaria, C., Kosinska Eriksson, U., Hedfalk, K., deGroot, B., Neutze, R.To be published.
5BN2
Room Temperature Structure of Pichia pastoris aquaporin at 1.3 A
- PDB DOI: https://doi.org/10.2210/pdb5BN2/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Komagataella pastoris
- Expression System: Komagataella pastoris
- Mutation(s): No
- Membrane Protein: Yes PDBTMMemProtMD
- Deposited: 2015-05-25 Released: 2016-06-29
- Funding Organization(s): European Research Council
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.143
- R-Value Work: 0.114
- R-Value Observed: 0.116
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| AQY1 protein | 279 | Komagataella pastoris | Mutation(s): 0 Gene Names: AQY1, PP7435_Chr3-0430 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for F2QVG4 (Komagataella phaffii (strain ATCC 76273 / CBS 7435 / CECT 11047 / NRRL Y-11430 / Wegner 21-1)) Explore F2QVG4 Go to UniProtKB: F2QVG4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F2QVG4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BOG Query on BOG | B [auth A] | octyl beta-D-glucopyranoside C14 H28 O6 HEGSGKPQLMEBJL-RKQHYHRCSA-N |  | ||
| CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A], D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.143
- R-Value Work: 0.114
- R-Value Observed: 0.116
- Space Group: I 4
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.487 | α = 90 |
| b = 92.487 | β = 90 |
| c = 81.191 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-06-29 Deposition Author(s): Fischer, G., Kosinska Eriksson, U., Hedfalk, K., Neutze, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Research Council | Sweden | MArie Curie Training Network "Aqua(glycero)porins" |
Revision History (Full details and data files)
- Version 1.0: 2016-06-29
Type: Initial release - Version 1.1: 2018-01-17
Changes: Advisory, Data collection - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2024-01-10
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary
