4V7Q
Atomic model of an infectious rotavirus particle
- PDB DOI: https://doi.org/10.2210/pdb4V7Q/pdb
- Entry: 4V7Q supersedes: 3IYU, 3N09
- EM Map EMD-5199: EMDB EMDataResource
- Classification: VIRUS
- Organism(s): Simian rotavirus A strain RRV
- Expression System: Chlorocebus sabaeus
- Mutation(s): No 
- Deposited: 2010-05-13 Released: 2014-07-09 
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.80 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Core scaffold protein | A [auth AA], B [auth AB] | 800 | Simian rotavirus A strain RRV | Mutation(s): 0  Gene Names: Rotavirus | |
UniProt | |||||
Find proteins for B3F2X3 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore B3F2X3  Go to UniProtKB:  B3F2X3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B3F2X3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Intermediate capsid protein VP6 | 397 | Simian rotavirus A strain RRV | Mutation(s): 0  Gene Names: Rotavirus | ||
UniProt | |||||
Find proteins for B2BN53 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore B2BN53  Go to UniProtKB:  B2BN53 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B2BN53 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Outer layer protein VP7 | 276 | Simian rotavirus A strain RRV | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P12476 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore P12476  Go to UniProtKB:  P12476 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12476 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Outer capsid protein VP4 | CA [auth BX], DA [auth BY], EA [auth BZ] | 776 | Simian rotavirus A strain RRV | Mutation(s): 0  | |
UniProt | |||||
Find proteins for C3RX20 (Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])) Explore C3RX20  Go to UniProtKB:  C3RX20 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3RX20 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 5 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | FA [auth A], GA [auth B], HA [auth C], IA [auth D], JA [auth E], FA [auth A], GA [auth B], HA [auth C], IA [auth D], JA [auth E], KA [auth F], LA [auth G] | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | RA [auth BM] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
ZN Query on ZN | MA [auth AC], NA [auth AF], OA [auth AK], PA [auth AN], QA [auth AO] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.80 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Entry History 
Deposition Data
- Released Date: 2014-07-09  Deposition Author(s): Settembre, E.C., Chen, J.Z., Dormitzer, P.R., Grigorieff, N., Harrison, S.C.
- This entry supersedes: 3IYU, 3N09
Revision History (Full details and data files)
- Version 1.0: 2014-07-09
Type: Initial release - Version 1.1: 2014-12-10
Changes: Other - Version 1.2: 2018-01-24
Changes: Data collection, Structure summary - Version 1.3: 2019-12-18
Changes: Database references, Derived calculations, Other - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary