4OO9

Structure of the human class C GPCR metabotropic glutamate receptor 5 transmembrane domain in complex with the negative allosteric modulator mavoglurant

Structural Biology Knowledgebase: 4OO9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 4OO9

Classification: MEMBRANE PROTEIN

Total Structure Weight: 51555.68

Macromolecule Entities
Molecule Chains Length Organism Details
Metabotropic glutamate receptor 5, Lysozyme, Metabotropic glutamate receptor 5 chimera A 444 Homo sapiens Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Fragment: SEE REMARK 999
Mutation: E579A, N667Y, I669A, G675M, C1054T, C1097A, T742A, S753A
Gene Name(s): E GRM5 Gene View GPRC1E MGLUR5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: Class C GPCR Metabotropic Glutamate Receptor 5 (mGlu5) with bound negative allosteric modulator


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2U8
Query on 2U8

A Mavoglurant
4S, (Synonym)
C19 H23 N O3
ZFPZEYHRWGMJCV-ZHALLVOQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLA
Query on OLA

A OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
2U8 IC50: 10 - 72 nM (95) BindingDB
Ki: 10 nM (95) BindingDB

N/A in BindingMoad
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
YCM
Query on YCM
A L-PEPTIDE LINKING C5 H10 N2 O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.239
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 143.24 α = 90.00
b = 43.56 β = 99.37
c = 82.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-31
  • Released Date: 2014-07-02
  • Deposition author(s): Dore, A.S., Okrasa, K., Patel, J.C., Serrano-Vega, M., Bennett, K., Cooke, R.M., Errey, J.C., Jazayeri, A., Khan, S., Tehan, B., Weir, M., Wiggin, G.R., Marshall, F.H.

Revision History

  • 2015-07-15
    Type: Source and taxonomy | Details: Corrected source informatin
  • 2014-08-06
    Type: Citation | Details: Citation update
  • 2014-07-16
    Type: Non-polymer description | Details: corrected name of ligand 2U8
  • 2014-07-16
    Type: Source and taxonomy | Details: corrected source organism list
  • 2014-07-16
    Type: Atom nomenclature | Details: corrected residue numbering
  • 2014-07-16
    Type: Polymer description | Details: corrected chimera name
  • 2014-07-09
    Type: Citation | Details: corrected citation