4MOI

Pyranose 2-oxidase H450G/V546C double mutant with 3-fluorinated glucose

PDB DOI: https://doi.org/10.2210/pdb4MOI/pdb

Classification: OXIDOREDUCTASE
Organism(s): Trametes ochracea
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2013-09-12 Released: 2014-02-05
Deposition Author(s): Tan, T.C., Spadiut, O., Gandini, R., Haltrich, D., Divne, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.245
R-Value Work: 0.196
R-Value Observed: 0.197

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Macromolecule Content

Total Structure Weight: 142.89 kDa
Atom Count: 9,835
Modelled Residue Count: 1,152
Deposited Residue Count: 1,266
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyranose 2-oxidase	A, B	633	Trametes ochracea	Mutation(s): 2 Gene Names: p2o EC: 1.1.3.10
UniProt
Find proteins for Q7ZA32 (Trametes ochracea) Explore Q7ZA32 Go to UniProtKB: Q7ZA32
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q7ZA32
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FDA Query on FDA Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B]	C [auth A], E [auth B]	DIHYDROFLAVINE-ADENINE DINUCLEOTIDE C₂₇ H₃₅ N₉ O₁₅ P₂ YPZRHBJKEMOYQH-UYBVJOGSSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]
G3F Query on G3F Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B]	D [auth A], F [auth B]	3-deoxy-3-fluoro-beta-D-glucopyranose C₆ H₁₁ F O₅ BUMRBAMACDBPKO-AIECOIEWSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.245
R-Value Work: 0.196
R-Value Observed: 0.197
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 101.504	α = 90
b = 101.504	β = 90
c = 238.672	γ = 90

Software Package:

Software Name	Purpose
MxCuBE	data collection
PHASER	phasing
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2014-02-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-02-05
Type: Initial release
Version 1.1: 2018-03-07
Changes: Data collection
Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations

Prepare Data

Validate Data

Deposit Data

Help and Resources

4MOI

Pyranose 2-oxidase H450G/V546C double mutant with 3-fluorinated glucose

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Ligand Structure Quality Assessment

Deposition Data

Revision History (Full details and data files)