4M1D

Crystal structure of anti-HIV-1 Fab 447-52D in complex with V3 cyclic peptide MN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 4M1D

Classification: IMMUNE SYSTEM

Total Structure Weight: 99861.45

Macromolecule Entities
Molecule Chains Length Organism Details
Fab mAb 447-52D Light Chain L, M 216 Homo sapiens Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fab mAb 447-52D Heavy Chain H, I 231 Homo sapiens
Cyclic V3 Arch Peptide P, Q 14 Human immunodeficiency virus 1 Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

H, I, L, M GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.186
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 179.84 α = 90.00
b = 59.78 β = 127.35
c = 137.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-02
  • Released Date: 2013-09-04
  • Deposition author(s): Killikelly, A., Kong, X.P.

Revision History

  • 2013-12-25
    Type: Database references