4JY6

Crystal structure of human Fab PGT123, a broadly reactive and potent HIV-1 neutralizing antibody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 4JY6

Classification: IMMUNE SYSTEM

Total Structure Weight: 97064.46

Macromolecule Entities
Molecule Chains Length Organism Details
PGT123 light chain A, C 211 Homo sapiens Fragment: Fab
PGT123 heavy chain B, D 235 Homo sapiens Fragment: Fab

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.207
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 84.89 α = 90.00
b = 80.32 β = 93.85
c = 90.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-29
  • Released Date: 2013-05-08
  • Deposition author(s): Julien, J.-P., Diwanji, D.C., Burton, D.R., Wilson, I.A.

Revision History

  • 2013-05-15
    Type: Database references
  • 2013-06-19
    Type: Database references