4JIN

X-ray crystal structure of Archaeoglobus fulgidus Rio1 bound to (2E)-N-benzyl-2-cyano-3-(pyridine-4-yl)acrylamide (WP1086)

Structural Biology Knowledgebase: 4JIN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.179

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JIN

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 30401.20

Macromolecule Entities
Molecule Chains Length Organism Details
RIO-type serine/threonine-protein kinase Rio1 A 258 Archaeoglobus fulgidus EC#: 2.7.11.1 IUBMB
Gene Name(s): rio1 AF_1804

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1L7
Query on 1L7

A (2E)-N-benzyl-2-cyano-3-(pyridin-4-yl)prop- 2-enamide
C16 H13 N3 O
JGNYTGFSGUFNSH-XNTDXEJSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1L7 N/A in BindingDB
N/A in BindingMoad
Kd: 2280 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.179
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.55 α = 90.00
b = 52.61 β = 109.22
c = 63.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-06
  • Released Date: 2013-04-24
  • Deposition author(s): Mielecki, M., Krawiec, K., Kiburu, I., Grzelak, K., Wlodzimierz, Z., Kierdaszuk, B., Kowa, K., Fokt, I., Szymanski, S., Piotr, S., Szeja, W., Priebe, W., Lesyng, B., LaRonde-LeBlanc, N.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update