4JCN

Structure of ESP, serine protease from Staphylococcus epidermidis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.175 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Secreted proteases control autolysin-mediated biofilm growth of Staphylococcus aureus

Chen, C.Krishnan, V.Macon, K.Manne, K.Narayana, S.V.Schneewind, O.

(2013) J Biol Chem 288: 29440-29452

  • DOI: https://doi.org/10.1074/jbc.M113.502039
  • Primary Citation of Related Structures:  
    4JCN

  • PubMed Abstract: 

    Staphylococcus epidermidis, a commensal of humans, secretes Esp protease to prevent Staphylococcus aureus biofilm formation and colonization. Blocking S. aureus colonization may reduce the incidence of invasive infectious diseases; however, the mechanism whereby Esp disrupts biofilms is unknown. We show here that Esp cleaves autolysin (Atl)-derived murein hydrolases and prevents staphylococcal release of DNA, which serves as extracellular matrix in biofilms. The three-dimensional structure of Esp was revealed by x-ray crystallography and shown to be highly similar to that of S. aureus V8 (SspA). Both atl and sspA are necessary for biofilm formation, and purified SspA cleaves Atl-derived murein hydrolases. Thus, S. aureus biofilms are formed via the controlled secretion and proteolysis of autolysin, and this developmental program appears to be perturbed by the Esp protease of S. epidermidis.


  • Organizational Affiliation

    From the Department of Microbiology, University of Chicago, Chicago, Illinois 60637.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutamyl endopeptidase216Staphylococcus epidermidis ATCC 12228Mutation(s): 0 
Gene Names: espgseASE_1543
EC: 3.4.21.19
UniProt
Find proteins for P0C0Q2 (Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200))
Explore P0C0Q2 
Go to UniProtKB:  P0C0Q2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0C0Q2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.175 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.41α = 90
b = 60.36β = 98.59
c = 42.34γ = 90
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
d*TREKdata reduction
d*TREKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-09-04
    Type: Initial release
  • Version 1.1: 2014-10-01
    Changes: Database references
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Refinement description