4JB4

Expression, Purification, Characterization, and Solution NMR Study of Highly Deuterated Yeast Cytochrome c Peroxidase with Enhanced Solubility


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 4JB4

Classification: OXIDOREDUCTASE

Total Structure Weight: 70195.51

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c peroxidase, mitochondrial A, C 300 Saccharomyces cerevisiae EC#: 1.11.1.5 IUBMB
Fragment: cytochrome-c peroxidase, UNP residues 68-361
Mutation: T1M, T2K, P3T
Gene Name(s): CCP1 CCP CPO Gene View YKR066C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, C PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
F
Query on F

A, C FLUORIDE ION
F
KRHYYFGTRYWZRS-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.212
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 45.05 α = 90.00
b = 87.92 β = 105.14
c = 87.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-19
  • Released Date: 2013-04-10
  • Deposition author(s): Wohlkonig, A.C.

Revision History

  • Version 1_0: 2013-04-10

    Type: Initial release

  • Version 1_1: 2013-04-17

    Type: Database references