4IND

The Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus

• PDB DOI: https://doi.org/10.2210/pdb4IND/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Sulfolobus turreted icosahedral virus 1
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2013-01-04 Released: 2013-01-23 
• Deposition Author(s): Eilers, B.J., Kraft, D., Burgess, M.C., Young, M.J., Lawrence, C.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.217 
• R-Value Work: 0.188 
• R-Value Observed: 0.190 

Literature

The Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus

Eilers, B.J., Kraft, D., Burgess, M.C., Young, M.J., Lawrence, C.M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C5  (Explore in 3D)
Global Stoichiometry: Homo 5-mer - A5 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C5  (Explore in 3D)
Global Stoichiometry: Homo 5-mer - A5 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C5  (Explore in 3D)
Global Stoichiometry: Homo 5-mer - A5 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Cyclic - C5  (Explore in 3D)
Global Stoichiometry: Homo 5-mer - A5 

Biological assembly 4 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 856.53 kDa 
• Atom Count: 64,220 
• Modelled Residue Count: 7,540 
• Deposited Residue Count: 7,740 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
C381 turret protein	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	387	Sulfolobus turreted icosahedral virus 1	Mutation(s): 0  Gene Names: C381
UniProt
Find proteins for Q6Q0L3 (Sulfolobus turreted icosahedral virus 1) Explore Q6Q0L3  Go to UniProtKB:  Q6Q0L3

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
2HP	AA [auth B], AB [auth K], AC [auth T], BA [auth C], BB [auth L], BC [auth T], CA [auth C], CB [auth L], DA [auth D], DB [auth L], EA [auth D], EB [auth M], FA [auth D], FB [auth M], GA [auth E], GB [auth M], HA [auth E], HB [auth N], IA [auth E], IB [auth N], JA [auth F], JB [auth N], KA [auth F], KB [auth O], LA [auth F], LB [auth O], MA [auth G], MB [auth O], NA [auth G], NB [auth P], OA [auth G], OB [auth P], PA [auth H], PB [auth P], QA [auth H], QB [auth Q], RA [auth H], RB [auth Q], SA [auth I], SB [auth Q], TA [auth I], TB [auth Q], U [auth A], UA [auth I], UB [auth R], V [auth A], VA [auth I], VB [auth R], W [auth A], WA [auth J], WB [auth S], X [auth B], XA [auth J], XB [auth S], Y [auth B], YA [auth K], YB [auth S], Z [auth B], ZA [auth K], ZB [auth T]	DIHYDROGENPHOSPHATE ION H2 O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.217 
• R-Value Work: 0.188 
• R-Value Observed: 0.190 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.774	α = 81.84
b = 166.999	β = 82.17
c = 186.975	γ = 81.44

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection
XDS	data reduction
SCALA	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-01-23 
Deposition Author(s): Eilers, B.J., Kraft, D., Burgess, M.C., Young, M.J., Lawrence, C.M.

Revision History  

• Version 1.0: 2013-01-23
  Type: Initial release
  
• Version 1.1: 2017-11-15
  Changes: Refinement description
• Version 1.2: 2024-02-28
  Changes: Data collection, Database references, Derived calculations, Refinement description