4HR1

Structure of PAV1-137, a protein from the virus PAV1 that infects Pyrococcus abyssi.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.234 

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This is version 1.0 of the entry. See complete history


Literature

Crystal structure of PAV1-137: a protein from the virus PAV1 that infects Pyrococcus abyssi

Leulliot, N.Quevillon-Cheruel, S.Graille, M.Geslin, C.Flament, D.Romancer, M.L.Tilbeurgh, H.V.

(2013) Archaea 2013: 568053-568053

  • DOI: https://doi.org/10.1155/2013/568053
  • Primary Citation of Related Structures:  
    4HR1

  • PubMed Abstract: 

    Pyrococcus abyssi virus 1 (PAV1) was the first virus particle infecting a hyperthermophilic Euryarchaeota (Pyrococcus abyssi strain GE23) that has been isolated and characterized. It is lemon shaped and is decorated with a short fibered tail. PAV1 morphologically resembles the fusiform members of the family Fuselloviridae or the genus Salterprovirus. The 18 kb dsDNA genome of PAV1 contains 25 predicted genes, most of them of unknown function. To help assigning functions to these proteins, we have initiated structural studies of the PAV1 proteome. We determined the crystal structure of a putative protein of 137 residues (PAV1-137) at a resolution of 2.2 Å. The protein forms dimers both in solution and in the crystal. The fold of PAV1-137 is a four- α -helical bundle analogous to those found in some eukaryotic adhesion proteins such as focal adhesion kinase, suggesting that PAV1-137 is involved in protein-protein interactions.


  • Organizational Affiliation

    Institut de Biochimie et de Biophysique Moléculaire et Cellulaire, CNRS-UMR 8619, IFR115, Université Paris-Sud, Bâtiment 430, 91405 Orsay, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative uncharacterized protein126Pyrococcus abyssi virus 1Mutation(s): 0 
Gene Names: ORF137Pav1-137
UniProt
Find proteins for A5Y2E1 (Pyrococcus abyssi virus 1)
Explore A5Y2E1 
Go to UniProtKB:  A5Y2E1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA5Y2E1
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Putative uncharacterized protein126Pyrococcus abyssi virus 1Mutation(s): 0 
Gene Names: ORF137
UniProt
Find proteins for A5Y2E1 (Pyrococcus abyssi virus 1)
Explore A5Y2E1 
Go to UniProtKB:  A5Y2E1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA5Y2E1
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.234 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.5458α = 90
b = 73.5458β = 90
c = 191.5493γ = 120
Software Package:
Software NamePurpose
ADSCdata collection
SHARPphasing
BUSTERrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-06-19
    Type: Initial release