4GWG

Crystal Structure Analysis of 6-phosphogluconate dehydrogenase apo-form

Structural Biology Knowledgebase: 4GWG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 4GWG

Classification: OXIDOREDUCTASE

Total Structure Weight: 53665.84

Macromolecule Entities
Molecule Chains Length Organism Details
6-phosphogluconate dehydrogenase, decarboxylating A 484 Homo sapiens EC#: 1.1.1.44 IUBMB
Gene Name(s): PGD Gene View PGDH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.169
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 87.28 α = 90.00
b = 87.28 β = 90.00
c = 130.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-03
  • Released Date: 2012-11-28
  • Deposition author(s): He, C, Zhou, L., Zhang, L.

Revision History

  • 2012-12-05
    Type: Data collection | Details: Correct beamline