4EI2

Crystal Structures of MthK RCK gating ring bound to Barium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.11 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.209 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of a Ba(2+)-Bound Gating Ring Reveals Elementary Steps in RCK Domain Activation.

Smith, F.J.Pau, V.P.Cingolani, G.Rothberg, B.S.

(2012) Structure 20: 2038-2047

  • DOI: https://doi.org/10.1016/j.str.2012.09.014
  • Primary Citation of Related Structures:  
    4EI2

  • PubMed Abstract: 

    RCK domains control activity of a variety of K(+) channels and transporters through binding of cytoplasmic ligands. To gain insight toward mechanisms of RCK domain activation, we solved the structure of the RCK domain from the Ca(2+)-gated K(+) channel, MthK, bound with Ba(2+), at 3.1 Å resolution. The Ba(2+)-bound RCK domain was assembled as an octameric gating ring, as observed in structures of the full-length MthK channel, and shows Ba(2+) bound at several positions. One of the Ba(2+) sites, termed C1, overlaps with a known Ca(2+)-activation site, determined by residues D184 and E210. Functionally, Ba(2+) can activate reconstituted MthK channels as observed in electrophysiological recordings, whereas Mg(2+) (up to 100 mM) was ineffective. Ba(2+) activation was abolished by the mutation D184N, suggesting that Ba(2+) activates primarily through the C1 site. Our results suggest a working hypothesis for a sequence of ligand-dependent conformational changes that may underlie RCK domain activation and channel gating.


  • Organizational Affiliation

    Department of Biochemistry, Temple University School of Medicine, 3400 N. Broad Street, Philadelphia, PA 19140, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Calcium-gated potassium channel mthK
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
242Methanothermobacter thermautotrophicus str. Delta HMutation(s): 0 
Gene Names: mthKMTH_1520
Membrane Entity: Yes 
UniProt
Find proteins for O27564 (Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H))
Explore O27564 
Go to UniProtKB:  O27564
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO27564
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
BA
Query on BA

Download Ideal Coordinates CCD File 
AA [auth C]
AB [auth J]
BA [auth C]
BB [auth J]
CA [auth D]
AA [auth C],
AB [auth J],
BA [auth C],
BB [auth J],
CA [auth D],
CB [auth K],
DA [auth D],
DB [auth K],
EA [auth D],
EB [auth K],
FA [auth D],
FB [auth K],
GA [auth D],
GB [auth L],
HA [auth E],
HB [auth L],
IA [auth E],
IB [auth M],
JA [auth E],
JB [auth M],
KA [auth E],
KB [auth M],
LA [auth E],
LB [auth M],
MA [auth E],
MB [auth N],
NA [auth F],
NB [auth N],
OA [auth F],
OB [auth N],
PA [auth F],
PB [auth O],
Q [auth A],
QA [auth F],
QB [auth O],
R [auth A],
RA [auth G],
RB [auth O],
S [auth A],
SA [auth G],
SB [auth P],
T [auth A],
TA [auth G],
TB [auth P],
U [auth A],
UA [auth G],
UB [auth P],
V [auth B],
VA [auth H],
W [auth B],
WA [auth H],
X [auth B],
XA [auth I],
Y [auth B],
YA [auth I],
Z [auth C],
ZA [auth I]
BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.11 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.209 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 110.045α = 90
b = 136.419β = 90
c = 498.427γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-12-19
    Type: Initial release
  • Version 1.1: 2014-04-16
    Changes: Other
  • Version 1.2: 2024-02-28
    Changes: Data collection, Database references, Derived calculations