4DH0

X-ray Crystal Structure of 28-O-Methylrapamycin complexed with FKBP12: Is the Cyclohexyl Moiety Part of the Effector Domain of Rapamycin?

Structural Biology Knowledgebase: 4DH0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DH0

Classification: ISOMERASE / IMMUNOSUPPRESSANT

Total Structure Weight: 12764.81

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase FKBP1A A 107 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): FKBP1A Gene View FKBP1 FKBP12

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MR8
Query on MR8

A 28-O-Methylrapamycin
8,,6R (Synonym)
C52 H81 N O13
TXZXMCLTSBPVQD-JQEUAWNDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.217
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.50 α = 90.00
b = 49.70 β = 90.00
c = 55.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-27
  • Released Date: 2012-02-15
  • Deposition author(s): Kallen, J.

Revision History

No revisions since initial release