4DDI

Crystal structure of human OTUB1/UbcH5b~Ub/Ub

Structural Biology Knowledgebase: 4DDI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DDI

Classification: HYDROLASE / LIGASE

Total Structure Weight: 188810.77

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1 A, B, C 399 Homo sapiens EC#: 3.4.19.12 IUBMB
Mutation: C85S, C1091S
Gene Name(s): OTUB1 Gene View OTB1 OTU1 HSPC263
Polyubiquitin-C D, E, F..., G, H, ID, E, F, G, H, I 76 Homo sapiens Gene Name(s): UBC Gene View


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.219
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 173.74 α = 90.00
b = 106.22 β = 123.74
c = 134.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-18
  • Released Date: 2012-02-22
  • Deposition author(s): Juang, Y.C., Sanches, M., Sicheri, F.

Revision History

  • 2012-05-23
    Type: Other | Details: Reprocess as chimera was not recognized initially