4DDG

Crystal structure of human OTUB1/UbcH5b~Ub/Ub

Structural Biology Knowledgebase: 4DDG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.233

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DDG

Classification: HYDROLASE / LIGASE

Total Structure Weight: 377621.34

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1 A, B, C..., J, K, LA, B, C, J, K, L 399 Homo sapiens EC#: 2.3.2.23 IUBMB 3.4.19.12 IUBMB
Mutation: C85S, C1091S
Gene Name(s): UBE2D2 Gene View PUBC1 UBC4 UBC5B UBCH4 UBCH5B OTUB1 Gene View OTB1 OTU1 HSPC263
Polyubiquitin-C D, E, F..., G, H, I, M, N, O, P, Q, RD, E, F, G, H, I, M, N, O, P, Q, R 76 Homo sapiens Gene Name(s): UBC Gene View


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.233
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 134.57 α = 90.00
b = 104.93 β = 104.19
c = 148.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-18
  • Released Date: 2012-02-22
  • Deposition author(s): Juang, Y.C., Sanches, M., Sicheri, F.

Revision History

  • 2012-05-23
    Type: Other | Details: Reprocess as chimera was not recognized initially