4D6W

Crystal Structure of the low pH conformation of Chandipura Virus glycoprotein G ectodomain

• PDB DOI: https://doi.org/10.2210/pdb4D6W/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Chandipura virus
• Expression System: Vesicular stomatitis virus
• Mutation(s): No 


• Deposited: 2014-11-18 Released: 2015-03-04 
• Deposition Author(s): Baquero, E., Albertini, A., Raux, H., Bressanelli, S., Gaudin, Y.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.60 Å
• R-Value Free: 0.260 
• R-Value Work: 0.193 
• R-Value Observed: 0.197 

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 141.66 kDa 
• Atom Count: 9,745 
• Modelled Residue Count: 1,229 
• Deposited Residue Count: 1,257 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GLYCOPROTEIN G	A, B, C	419	Chandipura virus	Mutation(s): 0
UniProt
Find proteins for P13180 (Chandipura virus (strain I653514)) Explore P13180  Go to UniProtKB:  P13180

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	D	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose	E	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G86851RC GlyCosmos:  G86851RC GlyGen:  G86851RC

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	F [auth B], G [auth C]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.60 Å
• R-Value Free: 0.260 
• R-Value Work: 0.193 
• R-Value Observed: 0.197 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 365.59	α = 90
b = 83.5	β = 96.95
c = 60.82	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-03-04 
Deposition Author(s): Baquero, E., Albertini, A., Raux, H., Bressanelli, S., Gaudin, Y.

Revision History  

• Version 1.0: 2015-03-04
  Type: Initial release
  
• Version 1.1: 2015-04-08
  Changes: Database references
• Version 1.2: 2019-03-06
  Changes: Data collection, Derived calculations, Experimental preparation, Other
• Version 1.3: 2019-05-08
  Changes: Data collection, Experimental preparation
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary
• Version 2.1: 2023-12-20
  Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary