4CTH
Neprilysin variant G399V,G714K in complex with phosphoramidon
- PDB DOI: https://doi.org/10.2210/pdb4CTH/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Saccharomyces cerevisiae
- Mutation(s): Yes 
- Deposited: 2014-03-13 Released: 2014-08-13 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.261 
- R-Value Work: 0.209 
- R-Value Observed: 0.212 
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
NEPRILYSIN | 709 | Homo sapiens | Mutation(s): 2  EC: 3.4.24.11 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P08473 (Homo sapiens) Explore P08473  Go to UniProtKB:  P08473 | |||||
PHAROS:  P08473 GTEx:  ENSG00000196549  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P08473 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RDF Query on RDF | N [auth A] | N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN C23 H34 N3 O10 P ZPHBZEQOLSRPAK-XLCYBJAPSA-N | |||
NAG Query on NAG | B [auth A], C [auth A], D [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
GOL Query on GOL | F [auth A] G [auth A] H [auth A] I [auth A] J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN Query on ZN | E [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 5 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000638 (RDF) Query on PRD_000638 | N [auth A] | PHOSPHORAMIDON | Glycopeptide / Enzyme inhibitor |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.261 
- R-Value Work: 0.209 
- R-Value Observed: 0.212 
- Space Group: P 32 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 108.799 | α = 90 |
b = 108.799 | β = 90 |
c = 112.942 | γ = 120 |
Software Name | Purpose |
---|---|
BUSTER | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2014-08-13  Deposition Author(s): Webster, C.I., Burrell, M., Olsson, L., Fowler, S.B., Digby, S., Sandercock, A., Snijder, A., Tebbe, J., Haupts, U., Grudzinska, J., Jermutus, L., Andersson, C.
Revision History (Full details and data files)
- Version 1.0: 2014-08-13
Type: Initial release - Version 1.1: 2018-06-20
Changes: Data collection, Structure summary - Version 1.2: 2019-05-08
Changes: Data collection, Derived calculations, Experimental preparation - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 1.4: 2023-12-20
Changes: Data collection, Database references, Refinement description, Structure summary