4BRI

Legionella pneumophila NTPDase1 crystal form II (closed) in complex with MG UMPPNP

Structural Biology Knowledgebase: 4BRI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BRI

Classification: HYDROLASE

Total Structure Weight: 85238.30

Macromolecule Entities
Molecule Chains Length Organism Details
ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I A, B 368 Legionella pneumophila EC#: 3.6.1.5 IUBMB
Mutation: E137D, A149V
Gene Name(s): lpg1905

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UNP
Query on UNP

A, B 5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]uridine
C9 H16 N3 O14 P3
MCBVWUSULWKVON-XVFCMESISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A, B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.164
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.46 α = 90.00
b = 86.41 β = 106.53
c = 72.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-04
  • Released Date: 2013-07-17
  • Deposition author(s): Zebisch, M., Schaefer, P., Lauble, P., Straeter, N.

Revision History

  • 2013-12-25
    Type: Function and keywords | Details: KEYWDS
  • 2013-08-28
    Type: Citation | Details: JRNL