4BQ6
Crystal structure of the RGMB-NEO1 complex form 1
- PDB DOI: https://doi.org/10.2210/pdb4BQ6/pdb
- Classification: CELL ADHESION
- Organism(s): Mus musculus, Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2013-05-30 Released: 2013-06-12 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.267 
- R-Value Work: 0.218 
- R-Value Observed: 0.220 
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
NEOGENIN | 264 | Mus musculus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P97798 (Mus musculus) Explore P97798  Go to UniProtKB:  P97798 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P97798 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
RGM DOMAIN FAMILY MEMBER B | 122 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6NW40 (Homo sapiens) Explore Q6NW40  Go to UniProtKB:  Q6NW40 | |||||
PHAROS:  Q6NW40 GTEx:  ENSG00000174136  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6NW40 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
RGM DOMAIN FAMILY MEMBER B | 251 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6NW40 (Homo sapiens) Explore Q6NW40  Go to UniProtKB:  Q6NW40 | |||||
PHAROS:  Q6NW40 GTEx:  ENSG00000174136  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6NW40 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | G [auth A], H [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.267 
- R-Value Work: 0.218 
- R-Value Observed: 0.220 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 91.32 | α = 90 |
b = 100.39 | β = 90 |
c = 103.69 | γ = 90 |
Software Name | Purpose |
---|---|
BUSTER | refinement |
xia2 | data reduction |
SCALA | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2013-06-12  Deposition Author(s): Bell, C.H., Healey, E., van Erp, S., Bishop, B., Tang, C., Gilbert, R.J.C., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.
Revision History (Full details and data files)
- Version 1.0: 2013-06-12
Type: Initial release - Version 1.1: 2013-06-19
Changes: Database references - Version 1.2: 2013-07-17
Changes: Database references - Version 1.3: 2019-04-03
Changes: Data collection, Derived calculations, Other, Source and taxonomy - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary