4BOJ
Crystal structure of Bacillus circulans TN-31 Aman6 in complex with mannobiose
- PDB DOI: https://doi.org/10.2210/pdb4BOJ/pdb
- Classification: HYDROLASE
- Organism(s): Niallia circulans
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes 
- Deposited: 2013-05-21 Released: 2014-05-28 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.38 Å
- R-Value Free: 0.191 
- R-Value Work: 0.171 
- R-Value Observed: 0.172 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ALPHA-1,6-MANNANASE | 344 | Niallia circulans | Mutation(s): 1  | ||
UniProt | |||||
Find proteins for Q9Z4P9 (Niallia circulans) Explore Q9Z4P9  Go to UniProtKB:  Q9Z4P9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9Z4P9 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900118 Query on PRD_900118 | D, E, F | 6alpha-alpha-mannobiose | Oligosaccharide / Metabolism |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.38 Å
- R-Value Free: 0.191 
- R-Value Work: 0.171 
- R-Value Observed: 0.172 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 70.63 | α = 90 |
b = 114.14 | β = 90 |
c = 134.41 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHENIX | phasing |
Entry History 
Deposition Data
- Released Date: 2014-05-28  Deposition Author(s): Striebeck, A., van Aalten, D.M.F.
Revision History (Full details and data files)
- Version 1.0: 2014-05-28
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary